課程資訊
課程名稱
化學資訊
CHEMINFORMATICS 
開課學期
96-2 
授課對象
電機資訊學院  資訊工程學研究所  
授課教師
曾宇鳳 
課號
CSIE5730 
課程識別碼
922EU3500 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期四2,3,4(9:10~12:10) 
上課地點
資310 
備註
本課程以英語授課。本課程以英語授課。本課程以英語授課。本課程以英
總人數上限:30人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/962cheminfo 
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課程概述

The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.

Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.


Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel

Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811


 

課程目標
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation


 
課程要求
 
預期每週課後學習時數
 
Office Hours
每週四 15:00~17:00 
指定閱讀
 
參考書目
 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
期中考 
30% 
 
2. 
期末考 
30% 
 
3. 
作業 
20% 
 
4. 
報告 
0% 
 
5. 
出席 
20% 
 
 
課程進度
週次
日期
單元主題
第1週
2/21  Searching Chemical structures 
第2週
2/28  228和平紀念日 
第3週
3/06  Representation of Chemical Compounds 
第4週
3/13  暫停一次 
第5週
3/20  Representation of Chemical Structures and Graph theory 
第6週
3/27  Representation of Chemical Compounds 3 
第7週
4/03  Stereochemistry、Fragment、3D to surface 
第8週
4/10  Mid Term 
第9週
4/17  Database and Data Source 
第10週
4/24  Database and Data Source 2 
第11週
5/01  Searching Chemical Structures 
第12週
5/08  Calculation of Physical and Chemical Data 
第13週
5/15  Calculation of Physical and Chemical Data 2 
第14週
5/22  More on Molecular Dynamic Simulation 
第15週
5/29  Calculation of Structure Descriptors 1 
第16週
6/05  Lipinski rule of five & Calculation of Structure Descriptors 2 
第17週
6/12  Methods for Data Analysis & Applications 
第18週
6/19  Final Exam